<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Generative AI | Zerui "Jerry" Ma's personal website</title><link>https://jerma88.github.io/tags/generative-ai/</link><atom:link href="https://jerma88.github.io/tags/generative-ai/index.xml" rel="self" type="application/rss+xml"/><description>Generative AI</description><generator>Hugo Blox Builder (https://hugoblox.com)</generator><language>en-us</language><lastBuildDate>Sun, 01 Mar 2026 00:00:00 +0000</lastBuildDate><image><url>https://jerma88.github.io/media/icon_hu_982c5d63a71b2961.png</url><title>Generative AI</title><link>https://jerma88.github.io/tags/generative-ai/</link></image><item><title>High-Fidelity AI Video Generation Engine (LTX-2.5)</title><link>https://jerma88.github.io/project/video-generation-engine/</link><pubDate>Sun, 01 Mar 2026 00:00:00 +0000</pubDate><guid>https://jerma88.github.io/project/video-generation-engine/</guid><description>&lt;h1 id="high-fidelity-ai-video-generation-engine-ltx-25">High-Fidelity AI Video Generation Engine (LTX-2.5)&lt;/h1>
&lt;h2 id="overview">Overview&lt;/h2>
&lt;p>Engineered an ultra-low-latency, memory-efficient video generation pipeline leveraging the &lt;strong>LTX-2.5 Diffusion Transformer (DiT)&lt;/strong> architecture on a consumer &lt;strong>NVIDIA GeForce RTX 5080 GPU (Blackwell architecture)&lt;/strong>. By synthesizing custom low-precision quantized GEMM kernels and an asynchronous layer-wise weight offloading subsystem, this engine delivers high-resolution, multi-frame video synthesis within a 16GB VRAM budget.&lt;/p>
&lt;div class="mermaid">flowchart LR
A[Host System RAM\nPinned Memory] &lt;-->|Async DMA Stream\nLayer-wise Weights| B[NVIDIA RTX 5080\n16GB GDDR7]
subgraph GPU Computation
B --> C[Custom NVFP4 GEMM Kernels\nDynamic FP4/FP8 Casting]
C --> D[Spatio-Temporal DiT Layers\nFlashAttention + CUDA Graphs]
D --> E[Latent Frame Synthesis]
end
E --> F[High-Fidelity Video Output]
&lt;/div>
&lt;h2 id="technical-architectural-innovations">Technical Architectural Innovations&lt;/h2>
&lt;h3 id="1-custom-nvfp4-quantized-gemm-compilation">1. Custom NVFP4 Quantized GEMM Compilation&lt;/h3>
&lt;ul>
&lt;li>Designed and compiled custom &lt;strong>NVFP4 (NVIDIA 4-bit Floating Point)&lt;/strong> quantized GEMM kernels utilizing Blackwell tensor cores.&lt;/li>
&lt;li>Implemented robust dynamic FP4/FP8 casting with adaptive block-level scale-factor management, maintaining numerical stability across extreme gradient dynamics.&lt;/li>
&lt;li>Achieved a &lt;strong>65% reduction in model memory footprint&lt;/strong> with negligible visual fidelity degradation compared to standard FP16/BF16 baselines.&lt;/li>
&lt;/ul>
&lt;h3 id="2-asynchronous-pinned-memory-layer-wise-offloading">2. Asynchronous Pinned-Memory Layer-wise Offloading&lt;/h3>
&lt;ul>
&lt;li>Architected an asynchronous double-buffered weight streaming engine that exploits high-bandwidth PCIe Gen 5 DMA transfers.&lt;/li>
&lt;li>Streams individual DiT transformer blocks into VRAM concurrently with the forward-pass computation of preceding layers, completely hiding memory transfer latency.&lt;/li>
&lt;li>Enabled continuous multi-frame 1080p video generation within consumer 16GB VRAM, eliminating out-of-memory (OOM) exceptions.&lt;/li>
&lt;/ul>
&lt;h3 id="3-flashattention--cuda-graph-optimization">3. FlashAttention &amp;amp; CUDA Graph Optimization&lt;/h3>
&lt;ul>
&lt;li>Integrated fused FlashAttention kernels tailored for 3D spatio-temporal attention matrices.&lt;/li>
&lt;li>Captured static execution branches into CUDA Graphs, eradicating CPU-GPU launch overhead and cutting end-to-end inference latency by &lt;strong>42%&lt;/strong>.&lt;/li>
&lt;/ul>
&lt;h2 id="key-results--benchmarks">Key Results &amp;amp; Benchmarks&lt;/h2>
&lt;ul>
&lt;li>&lt;strong>Memory Footprint&lt;/strong>: Reduced from ~42 GB (BF16 unquantized) to &amp;lt;14.8 GB active VRAM.&lt;/li>
&lt;li>&lt;strong>Latency Acceleration&lt;/strong>: 42% end-to-end speedup over native PyTorch baseline implementations.&lt;/li>
&lt;li>&lt;strong>Visual Quality&lt;/strong>: Retained smooth temporal coherence and high perceptual score across complex multi-object video generations.&lt;/li>
&lt;/ul></description></item><item><title>Conditional Diffusion Models for Protein Trajectories (PyTAO)</title><link>https://jerma88.github.io/project/pytao/</link><pubDate>Thu, 15 Jan 2026 00:00:00 +0000</pubDate><guid>https://jerma88.github.io/project/pytao/</guid><description>&lt;h1 id="conditional-diffusion-models-for-protein-trajectories-pytao">Conditional Diffusion Models for Protein Trajectories (PyTAO)&lt;/h1>
&lt;h2 id="overview">Overview&lt;/h2>
&lt;p>Sampling continuous molecular dynamics and conformational transitions of proteins typically requires computationally prohibitive quantum mechanical / molecular mechanics (QM/MM) calculations. In collaboration with &lt;strong>Dr. Peng Tao&amp;rsquo;s Proteins and Computers Lab&lt;/strong> at SMU, we designed and trained conditional diffusion generative models capable of directly generating continuous biomolecular conformational trajectories from boundary structural coordinates, bypassing thousands of CPU/GPU hours of physics simulations.&lt;/p>
&lt;p>This work culminated in a research publication in the &lt;strong>Journal of Chemical Theory and Computation (ACS, 2026)&lt;/strong> and the open-source &lt;strong>PyTAO&lt;/strong> computational chemistry and trajectory toolkit.&lt;/p>
&lt;div class="mermaid">flowchart LR
A[Initial &amp; Target\nConformations] --> B[Conditional Diffusion Model\nNoise Scheduler &amp; Denoiser]
B --> C[Slurm HPC Training\nDistributed Data Parallel]
C --> D[Continuous Molecular Dynamics\nTrajectory Reconstruction]
D --> E[Validated Physical Coordinates\nBypassing QM/MM Cost]
&lt;/div>
&lt;h2 id="highlights--engineering">Highlights &amp;amp; Engineering&lt;/h2>
&lt;h3 id="1-conditional-generative-diffusion">1. Conditional Generative Diffusion&lt;/h3>
&lt;ul>
&lt;li>Implemented deep generative diffusion models conditioned on 3D Cartesian coordinates and learned invariant spatial representations.&lt;/li>
&lt;li>Reconstructed high-dimensional protein conformational trajectories with realistic bond angles and non-bonded interactions.&lt;/li>
&lt;/ul>
&lt;h3 id="2-high-performance-distributed-training-ddp">2. High-Performance Distributed Training (DDP)&lt;/h3>
&lt;ul>
&lt;li>Developed Slurm parallel batch training scripts leveraging PyTorch Distributed Data Parallel (DDP) across high-performance GPU clusters.&lt;/li>
&lt;li>Optimized tensor transformations and memory-mapped trajectory datasets for rapid epoch turnover.&lt;/li>
&lt;/ul>
&lt;h3 id="3-open-source-pytao-toolkit">3. Open-Source PyTAO Toolkit&lt;/h3>
&lt;ul>
&lt;li>Built, tested, and released the &lt;strong>PyTAO&lt;/strong> open-source Python library, integrating ONIOM calculation automation, coordinate parsing, and Slurm HPC job monitoring for computational chemistry workflows.&lt;/li>
&lt;/ul>
&lt;h2 id="publication">Publication&lt;/h2>
&lt;ul>
&lt;li>&lt;strong>Efficient sampling of short protein trajectories with conditional diffusion models&lt;/strong>&lt;br>
Chen Xiong, Praveen Kandhan, Dong Chen, Zerui Ma, Eric D. Smith, Peng Tao.&lt;br>
&lt;em>Journal of Chemical Theory and Computation&lt;/em> (ACS), 22(1), 78 (2026).&lt;br>
DOI:
.&lt;/li>
&lt;/ul></description></item><item><title>Efficient sampling of short protein trajectories with conditional diffusion models</title><link>https://jerma88.github.io/publication/26_jctc_protein/</link><pubDate>Thu, 15 Jan 2026 00:00:00 +0000</pubDate><guid>https://jerma88.github.io/publication/26_jctc_protein/</guid><description>&lt;p>Published in the &lt;strong>Journal of Chemical Theory and Computation (ACS)&lt;/strong>, 2026, 22(1), 78.&lt;br>
DOI:
.&lt;/p></description></item><item><title>Paper Published in Journal of Chemical Theory and Computation (ACS)</title><link>https://jerma88.github.io/post/26_jctc/</link><pubDate>Thu, 15 Jan 2026 00:00:00 +0000</pubDate><guid>https://jerma88.github.io/post/26_jctc/</guid><description>&lt;p>Our collaborative research paper,
, has been published in the &lt;strong>Journal of Chemical Theory and Computation (ACS)&lt;/strong>, Vol. 22, Iss. 1 (2026).&lt;/p>
&lt;p>Co-authored with Chen Xiong, Praveen Kandhan, Dong Chen, Eric D. Smith, and Dr. Peng Tao. Check out the open-source implementation in our
repository.&lt;/p></description></item></channel></rss>